Overview
The sections below document elements of the aggV2 dataset generation and presentation in more detail:
- Sample QC
- gVCF Aggregation
- Variant Normalisation
- Variant Representation
- Site QC, FILTER and INFO Fields
- Functional Annotation
The sections below discuss datasets that accompany the aggV2 release (PCs, relatedness, ancestry inference):
Help & Support
Help with aggV2
Please reach out via the Genomics England Service Desk for any issues related to the aggV2 aggregation or companion datasets, including "aggV2" in the title / description of your inquiry.